InQuBATE Workshop: Computational Problems in Single Cell Transcriptomics and Multi-omics
Welcome to the workshop on Computational Problems in Single Cell Transcriptomics and Multi-omics. This workshop is hosted by the Georgia Tech InQuBATE Training Program and organized by Dr. Xiuwei Zhang from the School of Computational Science and Engineering.
Topics
- Learning cell identities using transcriptome or multi-omics data which includes clustering, trajectory inference, lineage tracing, batch correction, multi-omics data integration, incorporation of spatial locations from spatial data.
- Gene-wise analysis including differential expression analysis, gene regulatory network inference using gene expression or multi-omics data, inference of cell-cell interactions.
- Benchmarking computational methods using simulation tools.
Event Details
Agenda
August 7: 9:00 - 2:15
- 9:30-9:50 Self-introduction
- 9:50-10:45 Talk 1: Overview, data imputation, denoising, dimensionality reduction
- 10:45-11:00 Break
- 11:00-11:30 Talk 2: Dimensionality reduction, clustering of scRNA-seq data, differential expression
- 11:30-12:15 Talk 3: Trajectory inference and lineage tracing
- 12:15-1:15 Lunch
- 1:15-2:15 Discussion
August 8: 8:45 - 2:00
- 8:45-9:15 Breakfast
- 9:15-10:00 Talk 4: Data integration
- 10:00-10:45 Talk 5: Inference of GRNs and CCIs
- 10:45-11:15 Coffee break and networking
- 11:15-12:15 Talk 6: Benchmarking computational methods using simulated data
- 12:15-1:15 Lunch
- 1:15-2:00 Discussion
Registration
To register for the workshop, please fill out the registration form here. Registration deadline is July 24th, 2023. Seats are limited and will be allocated on a first-come, first-served basis.
Contact Information
For any inquiries or further information, please contact us at xiuwei.zhang@gatech.edu.